PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00005.1.g05020.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 278aa    MW: 30231 Da    PI: 9.5674
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00005.1.g05020.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.31.5e-122280148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...........TTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg...........kgRtlkqcksrwqkyl 48
                                  +g W++eEde+l + ++++G  tW+++a+  g           ++R++k+ ++rw++yl
  Zjn_sc00005.1.g05020.1.sm.mk 22 KGLWSPEEDERLFNQITLHGVSTWSSVAQLAGkkitslslvfgLRRSGKSFRLRWLNYL 80
                                  678******************************************************97 PP

2Myb_DNA-binding383.9e-1288141346
                                   SS-HHHHHHHHHHHHHTTTT...........-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...........tWktIartmgkgRtlkqcksrwqk 46 
                                   + ++ E+e ++ + + lG++           +W++Ia++m+ gRt++++k++w++
  Zjn_sc00005.1.g05020.1.sm.mk  88 PISKREEEVIISLQRSLGNRfrvtvltsmvrRWSAIAAKMP-GRTDNEIKNFWNS 141
                                   56889************************************.***********95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.711784IPR017930Myb domain
SuperFamilySSF466891.95E-1921139IPR009057Homeodomain-like
SMARTSM007172.4E-72182IPR001005SANT/Myb domain
PfamPF002492.5E-102280IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-172387IPR009057Homeodomain-like
CDDcd001671.47E-62580No hitNo description
PROSITE profilePS5129410.70885147IPR017930Myb domain
SMARTSM007179.4E-985145IPR001005SANT/Myb domain
PfamPF002491.2E-988141IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-1988147IPR009057Homeodomain-like
CDDcd001677.70E-888140No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MVRKPSHDDA GRPGTGENKE RKGLWSPEED ERLFNQITLH GVSTWSSVAQ LAGKKITSLS  60
LVFGLRRSGK SFRLRWLNYL RPGLKKEPIS KREEEVIISL QRSLGNRFRV TVLTSMVRRW  120
SAIAAKMPGR TDNEIKNFWN SRIRKRLNPA AKSGRARAAG NSAEEQVPAA ERTEESTDKA  180
GTAAAAPAPL TIPARFPVFA CQLVDRSAGA ALTSTTITEQ QNSSSEESEA SVGVDGSEDS  240
ARCAAAAGDS NMIQGFLAFD ELDYPADLLV DVPGVMDA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-182214727128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0029122e-34AP002912.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0028E10.
GenBankAP0033392e-34AP003339.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OJ1276_B06.
GenBankAP0149572e-34AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankAY4593432e-34AY459343.1 Oryza sativa (japonica cultivar-group) clone CL018501.1 R2R3-MYB gene region.
GenBankCP0126092e-34CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968332.14e-98PREDICTED: transcription factor MYB82-like
TrEMBLK3XL224e-98K3XL22_SETIT; Uncharacterized protein
STRINGSi002595m1e-97(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP87032545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01680.29e-40myb domain protein 55